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Our Cygwin packages also include a superior terminal window called mintty,a lightweight text editor, nano,and the vi editor. The primary advantage of the mintty window is that you can copy and paste just like under Unix (highlight with left mouse button, paste with middle mouse button). This capability uses the Windows clipboard, so you can copy text in a Windows program (Ctrl-C) and paste with the mouse in the mintty window, or highlight in the mintty window and paste in a Windows program with Ctrl-V. Another advantage is that you can resize the mintty window horizontally as well as vertically.
Sometimes there are permission problems that might prevent the installer from copying some files at the end of the installation, or that result in errors or prevent the creation of some files during tomogram setup in Etomo. If this happens, try editing the file /etc/fstab within Cygwin with one of the provided editors. This line determines how all drives should be mounted (including permissions): 'none /cygdrive cygdrive binary,posix=0,user 0 0' The line should be edited to: 'none /cygdrive cygdrive binary,noacl,posix=0,user 0 0 This setting makes Cygwin ignore the windows Access Control List and prevents these permission errors.
We recommend using only the number of physical cores on the system when there is hyperthreading available. For the computational tasks in IMOD, using more than the number of physical cores is usually of little benefit at best, and using all of the hypercores will make jobs take longer overall. To determine the number of physical cores, you can enter imodqtassist -t Parallel processing on multiple machines requires two things in addition to a cpu.adoc file: it must be possible to log in to all machines via ssh without a password, and the data must be in a shared file system accessible to all machines. To set up ssh keys for access without passwords, simply run ssh-keygen -t rsa and type Enter for all of the queries. Then enter: cp $HOME/.ssh/id_rsa.pub $HOME/.ssh/authorized_keys If necessary, distribute this authorized_keys file to the .ssh directories on other machines that do not have the same home directory. The three different kinds of platforms (Linux/Unix, Mac OSX, Windows with Cygwin) may require separately generated keys. If this seems to be the case, run ssh-keygen once on each type of machine then combine the .ssh/id_rsa.pub files from each into one authorized_keys file. Distribute this combined authorized_keys file to the .ssh directories. 153554b96e
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