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We next determined a possible association between the presence of MTAP deletion and the MAPK/ERK pathway activation in pediatric gliomas. We were able to match molecular and genetic data for the Chinnaiyan dataset to a subset of 80 gliomas of our cohort, where 40 had MTAP deletion and 40 had MTAP intact tumors. Our analysis showed that MTAP deletions were more frequent in pediatric MAPK/ERK pathway activated gliomas. This observation was further confirmed by the observation that MTAP deletions were found to be significantly associated with WHO grade III gliomas (Supplementary Fig. 7). In particular, Kaplan-Meier analysis showed that patients with MTAP deletions had significantly shorter progression free survival times (median PFS: 3.3 months) compared to patients with MTAP intact tumors (median PFS: 7.7 months) (p = 0.0071 by log-rank test).
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